MLOC_75242 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1806940.08703940.08957770.116233
LEAShoots from the seedlings (10 cm shoot stage)0.26424600.046810.155384
INF1Young developing inflorescences (5mm)0.7907061.00481.103440.745306
INF2Developing inflorescences (1-1.5 cm)1.085761.11240.5563731.01316
ROORoots from the seedlings (10 cm shoot stage)0.1779350.09489850.1009250.13647
NODDeveloping tillers at six leaf stage, 3rd internode0.1402890.3331350.3212951.01004
CAR5Developing grain, bracts removed (5 DPA)0.4526730.6002730.3177810.432508
CAR15Developing grain, bracts removed (15 DPA)0.09064730.1900190.1340590.289045



CDS Structure of MLOC_75242






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75242.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75242.1CUST_13222_PI427708083AvailableAvailablecontig_6745 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g39560.1 +2 2e-99 259 126/188 (67%) 13108.m04222 protein OTU-like cysteine protease family protein, putative, expressed
TAIR PP10 AT3G57810.1 +2 5e-68 226 111/180 (62%) Cysteine proteinases superfamily protein | chr3:21416336-21417809 FORWARD LENGTH=274