MLOC_75227 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.190870.2525910.8604310.641937
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.0523686000.0484623
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)25.452579.585837.420279.3589
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_75227






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75227.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249284.1NoneNoneNoneNone
MLOC_75227.1CUST_487_PI427708083AvailableAvailablecontig_67424 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g07410.2 +3 3e-110 335 161/308 (52%) 13107.m00723 protein oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
TAIR PP10 AT5G24530.1 +3 2e-56 194 120/333 (36%) | Symbols: DMR6 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr5:8378964-8383154 FORWARD LENGTH=341