MLOC_7518 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 147.143 | 90.9518 | 82.5845 | 93.8529 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 42.4138 | 6.19581 | 11.0288 | 14.8616 |
| INF1 | Young developing inflorescences (5mm) | 260.792 | 284.616 | 256.415 | 226.334 |
| INF2 | Developing inflorescences (1-1.5 cm) | 246.11 | 280.307 | 238.227 | 281.523 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 71.4374 | 76.2284 | 76.9496 | 72.0511 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 3.65102 | 4.01371 | 3.8035 | 8.61282 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 58.5155 | 62.2984 | 51.275 | 56.0644 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.97167 | 4.17244 | 8.564 | 14.3589 |
CDS Structure of MLOC_7518
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_7518.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os09g23730.1 |
-3 |
7e-28 |
111 |
61/91 (67%) |
13109.m02246 protein HMG-Y-related protein A, putative, expressed |
| TAIR PP10 |
AT1G14900.1 |
-3 |
1e-19 |
87 |
43/85 (51%) |
| Symbols: HMGA | high mobility group A | chr1:5138665-5139353 REVERSE LENGTH=204 |
