MLOC_75137 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains248.771160.908168.528178.328
LEAShoots from the seedlings (10 cm shoot stage)100.17770.641593.046572.2455
INF1Young developing inflorescences (5mm)57.29956.508363.962847.5918
INF2Developing inflorescences (1-1.5 cm)36.006937.609444.337839.6771
ROORoots from the seedlings (10 cm shoot stage)137.119133.749118.716147.63
NODDeveloping tillers at six leaf stage, 3rd internode464.056572.084591.0781627.1
CAR5Developing grain, bracts removed (5 DPA)75.436778.935378.330770.1549
CAR15Developing grain, bracts removed (15 DPA)11.994212.355912.943126.8981



CDS Structure of MLOC_75137






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75137.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75137.1CUST_13217_PI427708083AvailableAvailablecontig_672082 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g60090.2 +3 1e-69 228 105/120 (88%) 13103.m06596 protein methylenetetrahydrofolate reductase, putative, expressed
TAIR PP10 AT3G59970.3 +3 3e-54 186 84/117 (72%) | Symbols: MTHFR1 | methylenetetrahydrofolate reductase 1 | chr3:22151303-22154323 FORWARD LENGTH=592