MLOC_75090 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.01959140.08577230.02212710.0674999
LEAShoots from the seedlings (10 cm shoot stage)0.02590550.06236520.0325620.0481461
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.6716960.4456880.2607680.558806
NODDeveloping tillers at six leaf stage, 3rd internode1.377461.424841.738274.33992
CAR5Developing grain, bracts removed (5 DPA)0.3208480.3896930.1718550.359682
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_75090






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75090.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75090.1CUST_16128_PI427708080AvailableAvailablecontig_67111 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g04290.1 +3 0.0 800 428/575 (74%) 13101.m00387 protein glycosyl hydrolase family 10 protein, putative
TAIR PP10 AT1G58370.1 +3 9e-151 466 243/540 (45%) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917