MLOC_75001 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.905228.271133.900828.278
LEAShoots from the seedlings (10 cm shoot stage)33.22523.394727.538922.2766
INF1Young developing inflorescences (5mm)24.879726.047526.010519.1803
INF2Developing inflorescences (1-1.5 cm)29.301331.882429.852629.8308
ROORoots from the seedlings (10 cm shoot stage)41.642940.060833.285542.2002
NODDeveloping tillers at six leaf stage, 3rd internode49.064656.510148.0763158.374
CAR5Developing grain, bracts removed (5 DPA)41.948740.597345.162436.0882
CAR15Developing grain, bracts removed (15 DPA)28.662826.352826.531355.8627



CDS Structure of MLOC_75001






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_75001.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_75001.1CUST_16120_PI427708080AvailableAvailablecontig_6694 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54624.1 +3 0.0 715 360/401 (90%) 13102.m06256 protein zinc finger family protein, putative, expressed
TAIR PP10 AT4G32600.1 +3 1e-143 428 224/413 (54%) RING/U-box superfamily protein | chr4:15724010-15725737 FORWARD LENGTH=453