MLOC_74964 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains286.231217.293248.243256.946
LEAShoots from the seedlings (10 cm shoot stage)253.028444.237564.847377.108
INF1Young developing inflorescences (5mm)144.021179.044187.812151.378
INF2Developing inflorescences (1-1.5 cm)233.508228.598243.692272.743
ROORoots from the seedlings (10 cm shoot stage)638.24541.902546.551741.6
NODDeveloping tillers at six leaf stage, 3rd internode481.315415.055384.7211307.73
CAR5Developing grain, bracts removed (5 DPA)147.951158.903145.15158.475
CAR15Developing grain, bracts removed (15 DPA)121.291126.541119.385299.313



CDS Structure of MLOC_74964






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_74964.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251678.1NoneNoneNoneNone
MLOC_74964.1CUST_6445_PI427708080AvailableAvailablecontig_66871 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g09240.2 +1 4e-74 225 113/117 (97%) 13108.m00971 protein autophagy-related protein, putative, expressed
TAIR PP10 AT4G21980.1 +1 5e-70 214 105/119 (88%) | Symbols: APG8A, ATG8A | Ubiquitin-like superfamily protein | chr4:11655913-11656809 FORWARD LENGTH=122