MLOC_74893 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.574342.822936.51430.8896
LEAShoots from the seedlings (10 cm shoot stage)38.991138.580332.059829.3291
INF1Young developing inflorescences (5mm)49.339448.324841.980136.6926
INF2Developing inflorescences (1-1.5 cm)44.248147.092740.755345.5358
ROORoots from the seedlings (10 cm shoot stage)22.970338.699327.649638.9001
NODDeveloping tillers at six leaf stage, 3rd internode21.281323.261317.823671.4499
CAR5Developing grain, bracts removed (5 DPA)49.45845.14750.401542.8023
CAR15Developing grain, bracts removed (15 DPA)17.397617.891917.353536.9979



CDS Structure of MLOC_74893






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_74893.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_74893.1CUST_16104_PI427708080AvailableAvailablecontig_6673 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01170.1 +3 0.0 863 512/627 (82%) 13102.m00028 protein HECT-domain domain containing protein, expressed
TAIR PP10 AT4G38600.1 +3 0.0 1605 970/1561 (62%) | Symbols: KAK, UPL3 | HEAT repeat ;HECT-domain (ubiquitin-transferase) | chr4:18041503-18049292 REVERSE LENGTH=1888