MLOC_74792 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains116.2271.390380.158392.6847
LEAShoots from the seedlings (10 cm shoot stage)32.674142.694740.548934.4443
INF1Young developing inflorescences (5mm)27.894932.027336.969531.1178
INF2Developing inflorescences (1-1.5 cm)20.966721.936424.462527.9554
ROORoots from the seedlings (10 cm shoot stage)75.066655.927865.16879.0201
NODDeveloping tillers at six leaf stage, 3rd internode59.064244.986946.5392135.898
CAR5Developing grain, bracts removed (5 DPA)58.123374.844455.883674.1123
CAR15Developing grain, bracts removed (15 DPA)75.453666.82155.6548187.953



CDS Structure of MLOC_74792






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_74792.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250616.1NoneNoneNoneNone
MLOC_74792.1CUST_6427_PI427708080AvailableAvailablecontig_66533 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g73140.1 +1 9e-52 168 90/111 (81%) 13101.m07983 protein ubiquitin-fold modifier 1 precursor, putative, expressed
TAIR PP10 AT1G77710.1 +1 7e-49 159 79/82 (96%) CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | chr1:29206750-29207895 FORWARD LENGTH=93