MLOC_74560 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains152.479137.931132.803141.491
LEAShoots from the seedlings (10 cm shoot stage)81.412158.920254.213555.8902
INF1Young developing inflorescences (5mm)151.47153.573150.071127.775
INF2Developing inflorescences (1-1.5 cm)104.836109.536115.201119.176
ROORoots from the seedlings (10 cm shoot stage)121.426131.136136.934157.96
NODDeveloping tillers at six leaf stage, 3rd internode94.712674.285562.5106241.807
CAR5Developing grain, bracts removed (5 DPA)139.791136.402136.288134.318
CAR15Developing grain, bracts removed (15 DPA)32.038130.264332.226271.4873



CDS Structure of MLOC_74560






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_74560.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367709NoneNoneNoneNone
MLOC_74560.1CUST_6389_PI427708080AvailableAvailablecontig_66095 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g40140.1 -3 1e-159 455 230/237 (97%) 13111.m03969 protein peptidase, T1 family, putative, expressed
TAIR PP10 AT1G53850.2 -3 7e-155 442 219/237 (92%) | Symbols: PAE1 | 20S proteasome alpha subunit E1 | chr1:20104131-20105792 REVERSE LENGTH=237