- Predicted Gene MLOC_74560
MLOC_74560 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 152.479 | 137.931 | 132.803 | 141.491 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 81.4121 | 58.9202 | 54.2135 | 55.8902 |
INF1 | Young developing inflorescences (5mm) | 151.47 | 153.573 | 150.071 | 127.775 |
INF2 | Developing inflorescences (1-1.5 cm) | 104.836 | 109.536 | 115.201 | 119.176 |
ROO | Roots from the seedlings (10 cm shoot stage) | 121.426 | 131.136 | 136.934 | 157.96 |
NOD | Developing tillers at six leaf stage, 3rd internode | 94.7126 | 74.2855 | 62.5106 | 241.807 |
CAR5 | Developing grain, bracts removed (5 DPA) | 139.791 | 136.402 | 136.288 | 134.318 |
CAR15 | Developing grain, bracts removed (15 DPA) | 32.0381 | 30.2643 | 32.2262 | 71.4873 |
CDS Structure of MLOC_74560
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_74560.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os11g40140.1 |
-3 |
1e-159 |
455 |
230/237 (97%) |
13111.m03969 protein peptidase, T1 family, putative, expressed |
TAIR PP10 |
AT1G53850.2 |
-3 |
7e-155 |
442 |
219/237 (92%) |
| Symbols: PAE1 | 20S proteasome alpha subunit E1 | chr1:20104131-20105792 REVERSE LENGTH=237 |