MLOC_74474 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.70431.839361.533742.05114
LEAShoots from the seedlings (10 cm shoot stage)2.417161.329362.323991.64101
INF1Young developing inflorescences (5mm)6.358728.146866.239846.34201
INF2Developing inflorescences (1-1.5 cm)16.168319.499620.177222.0617
ROORoots from the seedlings (10 cm shoot stage)1.671320.9733561.190911.22497
NODDeveloping tillers at six leaf stage, 3rd internode2.313796.669425.2224416.6569
CAR5Developing grain, bracts removed (5 DPA)8.628519.260527.750259.04324
CAR15Developing grain, bracts removed (15 DPA)0.1441160.1014260.08331880.31016



CDS Structure of MLOC_74474






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_74474.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_74474.4CUST_9961_PI427708083AvailableAvailablecontig_65950 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32944.1 +3 1e-106 327 231/374 (62%) 13109.m03303 protein OsSPL18 - SBP-box gene family member, expressed
TAIR PP10 AT5G50570.2 +3 2e-37 141 77/155 (50%) | Symbols: SPL13A, SPL13 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr5:20582555-20583791 REVERSE LENGTH=359