- Predicted Gene MLOC_74474
MLOC_74474 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.7043 | 1.83936 | 1.53374 | 2.05114 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.41716 | 1.32936 | 2.32399 | 1.64101 |
INF1 | Young developing inflorescences (5mm) | 6.35872 | 8.14686 | 6.23984 | 6.34201 |
INF2 | Developing inflorescences (1-1.5 cm) | 16.1683 | 19.4996 | 20.1772 | 22.0617 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.67132 | 0.973356 | 1.19091 | 1.22497 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.31379 | 6.66942 | 5.22244 | 16.6569 |
CAR5 | Developing grain, bracts removed (5 DPA) | 8.62851 | 9.26052 | 7.75025 | 9.04324 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.144116 | 0.101426 | 0.0833188 | 0.31016 |
CDS Structure of MLOC_74474
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_74474.4
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g32944.1 |
+3 |
1e-106 |
327 |
231/374 (62%) |
13109.m03303 protein OsSPL18 - SBP-box gene family member, expressed |
TAIR PP10 |
AT5G50570.2 |
+3 |
2e-37 |
141 |
77/155 (50%) |
| Symbols: SPL13A, SPL13 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr5:20582555-20583791 REVERSE LENGTH=359 |