MLOC_73329 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.645640.517645.438652.0976
LEAShoots from the seedlings (10 cm shoot stage)45.136152.122650.457450.3004
INF1Young developing inflorescences (5mm)27.433832.5231.473231.5307
INF2Developing inflorescences (1-1.5 cm)46.127444.855552.260562.7751
ROORoots from the seedlings (10 cm shoot stage)40.47861.93656.675194.2625
NODDeveloping tillers at six leaf stage, 3rd internode86.0198101.17385.9026400.071
CAR5Developing grain, bracts removed (5 DPA)45.385951.085346.311659.5359
CAR15Developing grain, bracts removed (15 DPA)25.315725.336422.663269.8557



CDS Structure of MLOC_73329






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_73329.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364437NoneNoneNoneNone
MLOC_73329.1CUST_6262_PI427708080AvailableAvailablecontig_63407 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g01810.1 +3 6e-110 327 206/231 (89%) 13103.m00115 protein SNF7 domain containing protein, putative, expressed
TAIR PP10 AT5G22950.1 +3 2e-84 260 168/230 (73%) | Symbols: VPS24.1 | SNF7 family protein | chr5:7681380-7682720 FORWARD LENGTH=229