MLOC_73319 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.922111.064111.690312.4368
LEAShoots from the seedlings (10 cm shoot stage)12.589517.075918.732215.4973
INF1Young developing inflorescences (5mm)8.6393512.240313.967210.8466
INF2Developing inflorescences (1-1.5 cm)16.816516.741715.239719.9999
ROORoots from the seedlings (10 cm shoot stage)13.415120.173117.904427.3148
NODDeveloping tillers at six leaf stage, 3rd internode22.112433.876152.1241142.045
CAR5Developing grain, bracts removed (5 DPA)15.087216.418514.64817.2096
CAR15Developing grain, bracts removed (15 DPA)9.7621610.01859.3823325.5423



CDS Structure of MLOC_73319






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_73319.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_73319.1CUST_15907_PI427708080AvailableAvailablecontig_63378 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g27720.1 +1 2e-130 382 209/288 (73%) 13101.m02879 protein E3 ubiquitin-protein ligase MGRN1, putative, expressed
TAIR PP10 AT3G09770.1 +1 2e-80 256 131/249 (53%) RING/U-box superfamily protein | chr3:2996402-2997835 REVERSE LENGTH=388