MLOC_73300 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains27.789523.685822.685225.3851
LEAShoots from the seedlings (10 cm shoot stage)10.57198.401587.324537.0284
INF1Young developing inflorescences (5mm)2.107643.191292.279632.41196
INF2Developing inflorescences (1-1.5 cm)9.705033.92975.606327.49445
ROORoots from the seedlings (10 cm shoot stage)8.201488.210497.096289.1073
NODDeveloping tillers at six leaf stage, 3rd internode4.54551.482110.4509812.8
CAR5Developing grain, bracts removed (5 DPA)3.085562.059412.533392.73134
CAR15Developing grain, bracts removed (15 DPA)2.112871.392151.736254.72678



CDS Structure of MLOC_73300






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_73300.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354435NoneNoneNoneNone
MLOC_73300.1CUST_6258_PI427708080AvailableAvailablecontig_63333 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g35960.1 -1 4e-99 303 171/227 (75%) 13106.m03713 protein HSF-type DNA-binding domain containing protein, expressed
TAIR PP10 AT3G24520.1 -1 9e-51 178 96/193 (50%) | Symbols: AT-HSFC1, HSFC1 | heat shock transcription factor C1 | chr3:8941455-8942531 FORWARD LENGTH=330