MLOC_73240 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9669570.9097650.7000660.870198
LEAShoots from the seedlings (10 cm shoot stage)0.3580210.12325800.206835
INF1Young developing inflorescences (5mm)0.05101330.1190530.1269540.104854
INF2Developing inflorescences (1-1.5 cm)0.02721020.02596720.03250760.0333675
ROORoots from the seedlings (10 cm shoot stage)0.5082821.011190.7055141.04644
NODDeveloping tillers at six leaf stage, 3rd internode00.02866150.08655920.190184
CAR5Developing grain, bracts removed (5 DPA)8.8050811.02719.1761410.1925
CAR15Developing grain, bracts removed (15 DPA)2.307362.084381.745395.44634



CDS Structure of MLOC_73240






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_73240.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374964NoneNoneNoneNone
MLOC_73240.1CUST_6252_PI427708080AvailableAvailablecontig_63214 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g64280.1 -2 2e-127 379 217/367 (59%) 13103.m07142 protein 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
TAIR PP10 AT1G06620.1 -2 7e-106 323 188/373 (50%) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | chr1:2025618-2027094 FORWARD LENGTH=365