MLOC_73160 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.221524.447421.312819.5379
LEAShoots from the seedlings (10 cm shoot stage)27.497320.612920.111219.5939
INF1Young developing inflorescences (5mm)85.612182.48283.21967.1949
INF2Developing inflorescences (1-1.5 cm)121.738127.259110.912125.107
ROORoots from the seedlings (10 cm shoot stage)14.677126.256518.775628.1181
NODDeveloping tillers at six leaf stage, 3rd internode8.2182712.237311.767838.3675
CAR5Developing grain, bracts removed (5 DPA)62.681350.996362.899152.5714
CAR15Developing grain, bracts removed (15 DPA)29.462929.088332.170761.8185



CDS Structure of MLOC_73160






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_73160.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371102NoneNoneNoneNone
MLOC_73160.1CUST_6237_PI427708080AvailableAvailablecontig_63077 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05860.1 -1 0.0 2608 1309/1422 (92%) 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT4G35800.1 -1 0.0 2487 1227/1421 (86%) | Symbols: NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS | RNA polymerase II large subunit | chr4:16961115-16967892 REVERSE LENGTH=1839