MLOC_72928 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.224815.634413.392417.9723
LEAShoots from the seedlings (10 cm shoot stage)140.52206.523214.657181.358
INF1Young developing inflorescences (5mm)11.776611.319511.393511.4437
INF2Developing inflorescences (1-1.5 cm)8.896719.3805910.362212.5285
ROORoots from the seedlings (10 cm shoot stage)12.460514.254811.654519.7066
NODDeveloping tillers at six leaf stage, 3rd internode44.118757.676762.019210.653
CAR5Developing grain, bracts removed (5 DPA)36.056238.050737.418245.4632
CAR15Developing grain, bracts removed (15 DPA)8.587379.274458.1959724.4133



CDS Structure of MLOC_72928






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72928.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK253128.1CUST_13984_PI427708083NoneNoneNone
MLOC_72928.1CUST_18431_PI427708080AvailableAvailablecontig_6263 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g51029.1 -1 0.0 939 524/549 (95%) 13106.m05493 protein OsFtsH1 FtsH protease, homologue of AtFtsH1/5, expressed
TAIR PP10 AT1G50250.1 -1 0.0 900 502/548 (92%) | Symbols: FTSH1 | FTSH protease 1 | chr1:18614398-18616930 REVERSE LENGTH=716