MLOC_72838 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.71468.61759.0677310.9329
LEAShoots from the seedlings (10 cm shoot stage)68.6656136.924176.968116.531
INF1Young developing inflorescences (5mm)6.090335.747496.188685.8819
INF2Developing inflorescences (1-1.5 cm)3.752433.795634.977655.40548
ROORoots from the seedlings (10 cm shoot stage)7.936525.637954.565638.14659
NODDeveloping tillers at six leaf stage, 3rd internode14.577517.779723.960559.1561
CAR5Developing grain, bracts removed (5 DPA)8.5038.487877.8435510.1537
CAR15Developing grain, bracts removed (15 DPA)0.9027221.160420.8778942.84603



CDS Structure of MLOC_72838






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72838.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354088NoneNoneNoneNone
MLOC_72838.1CUST_6203_PI427708080AvailableAvailablecontig_62477 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42500.1 +3 7e-138 405 234/318 (74%) 13110.m03995 protein PAP fibrillin family domain containing protein, expressed
TAIR PP10 AT2G35490.1 +3 1e-91 286 176/323 (54%) Plastid-lipid associated protein PAP / fibrillin family protein | chr2:14912309-14913797 REVERSE LENGTH=376