MLOC_72819 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.131928.928279.340355.91293
LEAShoots from the seedlings (10 cm shoot stage)9.726236.344212.893554.39167
INF1Young developing inflorescences (5mm)11.292315.932614.52388.18215
INF2Developing inflorescences (1-1.5 cm)10.960812.05677.22678.91502
ROORoots from the seedlings (10 cm shoot stage)6.435725.953088.014895.36549
NODDeveloping tillers at six leaf stage, 3rd internode10.28187.150679.3867117.3393
CAR5Developing grain, bracts removed (5 DPA)4.75973.760485.266853.2467
CAR15Developing grain, bracts removed (15 DPA)2.549741.959791.946153.94604



CDS Structure of MLOC_72819






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72819.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72819.2CUST_9788_PI427708083AvailableAvailablecontig_624421 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g45420.3 +1 3e-27 112 54/67 (81%) 13105.m04826 protein CAMK_KIN1/SNF1/Nim1_like_AMPKh.3 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT3G29160.3 +1 6e-22 94 48/79 (61%) | Symbols: AKIN11, KIN11 | SNF1 kinase homolog 11 | chr3:11129768-11131510 REVERSE LENGTH=359