MLOC_72715 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains54.081546.674545.617549.5935
LEAShoots from the seedlings (10 cm shoot stage)26.809623.21319.24219.9704
INF1Young developing inflorescences (5mm)39.816843.964236.747535.9976
INF2Developing inflorescences (1-1.5 cm)27.759127.652528.040431.6147
ROORoots from the seedlings (10 cm shoot stage)77.334448.682972.123967.4033
NODDeveloping tillers at six leaf stage, 3rd internode24.998220.851515.518867.3627
CAR5Developing grain, bracts removed (5 DPA)37.17638.846741.140639.9502
CAR15Developing grain, bracts removed (15 DPA)28.99932.368530.528872.9621



CDS Structure of MLOC_72715






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72715.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249950.1NoneNoneNoneNone
MLOC_72715.1CUST_6187_PI427708080AvailableAvailablecontig_62194 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g45440.2 +3 7e-156 451 213/240 (89%) 13106.m04789 protein haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed
TAIR PP10 AT5G44730.1 +3 4e-125 371 174/238 (73%) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:18045588-18046519 REVERSE LENGTH=255