MLOC_72682 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.018063.286723.299863.48123
LEAShoots from the seedlings (10 cm shoot stage)1.471270.2957331.256580.818894
INF1Young developing inflorescences (5mm)5.358657.095766.312274.7208
INF2Developing inflorescences (1-1.5 cm)4.48565.614044.60224.93488
ROORoots from the seedlings (10 cm shoot stage)1.081322.704811.002232.34205
NODDeveloping tillers at six leaf stage, 3rd internode2.144923.647582.160139.48491
CAR5Developing grain, bracts removed (5 DPA)1.502142.277881.892881.65436
CAR15Developing grain, bracts removed (15 DPA)0.2445870.297210.3561560.600489



CDS Structure of MLOC_72682






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72682.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72682.1CUST_17829_PI427708080AvailableAvailablecontig_62133 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g30780.1 -3 5e-36 103 53/136 (39%) 13112.m03136 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT3G09510.1 -3 3e-14 76 40/112 (36%) Ribonuclease H-like superfamily protein | chr3:2921804-2923258 FORWARD LENGTH=484