MLOC_72643 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.032276.439377.423966.85789
LEAShoots from the seedlings (10 cm shoot stage)6.196287.544618.240546.35031
INF1Young developing inflorescences (5mm)15.008313.395914.264311.332
INF2Developing inflorescences (1-1.5 cm)10.339111.77569.4803111.347
ROORoots from the seedlings (10 cm shoot stage)5.350266.101795.16417.24232
NODDeveloping tillers at six leaf stage, 3rd internode2.464673.469685.799912.8678
CAR5Developing grain, bracts removed (5 DPA)7.520927.459638.291677.27825
CAR15Developing grain, bracts removed (15 DPA)2.676542.789982.719885.71036



CDS Structure of MLOC_72643






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72643.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72643.1CUST_15827_PI427708080AvailableAvailablecontig_62034 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g43980.1 -1 3e-133 397 209/256 (82%) 13107.m04623 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
TAIR PP10 AT1G16280.1 -1 2e-91 288 154/260 (59%) | Symbols: RH36, AtRH36, SWA3 | RNA helicase 36 | chr1:5568482-5570487 REVERSE LENGTH=491