MLOC_72638 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.699992.581572.289282.97717
LEAShoots from the seedlings (10 cm shoot stage)0.438297000.389984
INF1Young developing inflorescences (5mm)0.34143200.2761360.209996
INF2Developing inflorescences (1-1.5 cm)0.454910.7902660.642890.857989
ROORoots from the seedlings (10 cm shoot stage)5.152533.219583.732844.27433
NODDeveloping tillers at six leaf stage, 3rd internode0.03698520.01141590.03265070.0425138
CAR5Developing grain, bracts removed (5 DPA)23.606231.650623.360530.7018
CAR15Developing grain, bracts removed (15 DPA)5.241045.324464.7264314.3022



CDS Structure of MLOC_72638






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72638.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72638.2CUST_15826_PI427708080AvailableAvailablecontig_62020 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g51200.1 -2 2e-53 174 109/119 (92%) 13103.m05566 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
TAIR PP10 AT1G54690.1 -2 7e-53 171 110/120 (92%) | Symbols: HTA3, H2AXB, G-H2AX, GAMMA-H2AX | gamma histone variant H2AX | chr1:20414607-20415206 REVERSE LENGTH=142