MLOC_72635 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.521962.130251.919072.4418
LEAShoots from the seedlings (10 cm shoot stage)1.370880.1132090.2459360.464824
INF1Young developing inflorescences (5mm)7.580778.061477.860217.65327
INF2Developing inflorescences (1-1.5 cm)5.578198.298017.90199.78079
ROORoots from the seedlings (10 cm shoot stage)3.504542.010912.746332.76268
NODDeveloping tillers at six leaf stage, 3rd internode1.319350.7715032.505453.1901
CAR5Developing grain, bracts removed (5 DPA)2.556163.580283.084123.73872
CAR15Developing grain, bracts removed (15 DPA)0.3187280.3522120.6271671.20548



CDS Structure of MLOC_72635






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72635.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72635.1CUST_9756_PI427708083AvailableAvailablecontig_62018 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44640.1 -3 1e-83 290 177/227 (78%) 13104.m04463 protein ulp1 protease family, C-terminal catalytic domain containing protein, expressed
TAIR PP10 AT5G37010.1 -3 1e-16 84 62/169 (37%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65710.1); Has 6746 Blast hits to 5259 proteins in 486 species: Archae - 7; Bacteria - 485; Metazoa - 3508; Fungi - 577; Plants - 378; Viruses - 50; Other Eukaryotes - 1741 (source: NCBI BLink). | chr5:14620853-14622879 REVERSE LENGTH=637