MLOC_72621 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.429433.084423.017063.04467
LEAShoots from the seedlings (10 cm shoot stage)1.440370.1885050.2621630.563026
INF1Young developing inflorescences (5mm)9.577998.552718.699357.90125
INF2Developing inflorescences (1-1.5 cm)7.401089.774028.8089810.0468
ROORoots from the seedlings (10 cm shoot stage)2.045581.968322.40292.57467
NODDeveloping tillers at six leaf stage, 3rd internode0.1066360.03203050.1103550.165039
CAR5Developing grain, bracts removed (5 DPA)3.858095.095793.607924.40587
CAR15Developing grain, bracts removed (15 DPA)0.9060590.788250.6797551.91255



CDS Structure of MLOC_72621






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72621.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72621.2CUST_15822_PI427708080AvailableAvailablecontig_61996 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g03360.1 -2 7e-154 446 245/323 (76%) 13112.m00292 protein EMB1379, putative, expressed
TAIR PP10 AT5G21140.1 -2 2e-100 307 143/248 (58%) | Symbols: emb1379 | embryo defective 1379 | chr5:7187416-7189521 REVERSE LENGTH=312