MLOC_72620 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.130540.5870561.099230.812027
LEAShoots from the seedlings (10 cm shoot stage)0.3026560.3017260.3044290.236737
INF1Young developing inflorescences (5mm)0.6656830.5534380.6817580.583109
INF2Developing inflorescences (1-1.5 cm)0.376480.6744280.5334840.651536
ROORoots from the seedlings (10 cm shoot stage)2.167330.458740.7976360.74161
NODDeveloping tillers at six leaf stage, 3rd internode0.1453470.09929920.0974080.249319
CAR5Developing grain, bracts removed (5 DPA)0.6586151.002630.6081010.824601
CAR15Developing grain, bracts removed (15 DPA)0.4478580.3303880.1415270.862749



CDS Structure of MLOC_72620






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72620.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374691NoneNoneNoneNone
MLOC_72620.1CUST_6173_PI427708080AvailableAvailablecontig_61996 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g03600.1 +1 2e-117 348 196/254 (77%) 13111.m00300 protein harpin-induced protein 1 domain containing protein, expressed
TAIR PP10 AT2G27080.2 +1 9e-41 147 76/218 (35%) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | chr2:11566383-11567165 FORWARD LENGTH=260