MLOC_72617 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.63413.283512.426411.4715
LEAShoots from the seedlings (10 cm shoot stage)11.1674.064024.14375.37149
INF1Young developing inflorescences (5mm)56.278362.905366.066342.6971
INF2Developing inflorescences (1-1.5 cm)30.515337.187629.149530.8425
ROORoots from the seedlings (10 cm shoot stage)3.088227.290499.92136.84765
NODDeveloping tillers at six leaf stage, 3rd internode0.06221010.1100820.08533180.346767
CAR5Developing grain, bracts removed (5 DPA)9.0190110.970210.30558.18136
CAR15Developing grain, bracts removed (15 DPA)1.74581.036062.431742.98789



CDS Structure of MLOC_72617






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72617.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72617.1CUST_15821_PI427708080AvailableAvailablecontig_61991 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g59750.1 +3 5e-69 223 115/156 (74%) 13103.m06561 protein DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative, expressed
TAIR PP10 AT3G10690.1 +3 2e-47 172 91/151 (60%) | Symbols: GYRA | DNA GYRASE A | chr3:3339612-3346243 REVERSE LENGTH=950