MLOC_72589 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.873510.02638.4100811.6996
LEAShoots from the seedlings (10 cm shoot stage)5.127915.34946.449335.67431
INF1Young developing inflorescences (5mm)17.017319.5416.753316.2378
INF2Developing inflorescences (1-1.5 cm)15.029915.192416.864417.6212
ROORoots from the seedlings (10 cm shoot stage)5.37768.382849.4328511.7776
NODDeveloping tillers at six leaf stage, 3rd internode0.3139880.2271590.2740670.866305
CAR5Developing grain, bracts removed (5 DPA)10.60511.290210.838811.322
CAR15Developing grain, bracts removed (15 DPA)5.660086.922545.5311814.5344



CDS Structure of MLOC_72589






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72589.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374216NoneNoneNoneNone
MLOC_72589.5CUST_6171_PI427708080AvailableAvailablecontig_61943 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g53280.2 -3 2e-80 241 118/122 (97%) 13101.m05581 protein 50S ribosomal protein L20, putative, expressed
TAIR PP10 AT1G16740.1 -3 1e-67 207 101/114 (89%) Ribosomal protein L20 | chr1:5727773-5728950 FORWARD LENGTH=126