MLOC_72556 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.401310.807512.5279.48762
LEAShoots from the seedlings (10 cm shoot stage)17.78812.872815.382912.2921
INF1Young developing inflorescences (5mm)18.199623.5922.316815.4091
INF2Developing inflorescences (1-1.5 cm)21.969524.973523.76321.5805
ROORoots from the seedlings (10 cm shoot stage)31.344124.479727.138127.7396
NODDeveloping tillers at six leaf stage, 3rd internode16.915122.33615.007564.9619
CAR5Developing grain, bracts removed (5 DPA)15.578215.312814.482912.182
CAR15Developing grain, bracts removed (15 DPA)7.317366.953236.4288213.379



CDS Structure of MLOC_72556






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72556.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366642NoneNoneNoneNone
MLOC_72556.1CUST_6166_PI427708080AvailableAvailablecontig_61882 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g03780.1 +3 4e-98 312 162/180 (90%) 13105.m00370 protein cation efflux family protein, putative, expressed
TAIR PP10 AT2G46800.2 +3 2e-73 246 129/171 (75%) | Symbols: ZAT, ATMTP1, MTP1, ZAT1, ATCDF1 | zinc transporter of Arabidopsis thaliana | chr2:19238128-19239324 FORWARD LENGTH=398