MLOC_72547 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.7087380.7790861.043630.878349
LEAShoots from the seedlings (10 cm shoot stage)20.210842.312640.132627.8043
INF1Young developing inflorescences (5mm)0.04933710.01980090.02108340.0273699
INF2Developing inflorescences (1-1.5 cm)0.0356920.1035110.2117570.133492
ROORoots from the seedlings (10 cm shoot stage)0.2554660.2536210.2328740.288642
NODDeveloping tillers at six leaf stage, 3rd internode00.008256150.07144130.0979427
CAR5Developing grain, bracts removed (5 DPA)0.2623090.2316120.2680570.274367
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_72547






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72547.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354751NoneNoneNoneNone
MLOC_72547.2CUST_18425_PI427708080AvailableAvailablecontig_61776 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28620.1 +3 1e-133 407 234/329 (71%) 13109.m02824 protein gibberellin receptor GID1L2, putative, expressed
TAIR PP10 AT1G47480.1 +3 7e-60 207 119/298 (40%) alpha/beta-Hydrolases superfamily protein | chr1:17417623-17419296 FORWARD LENGTH=314