MLOC_72527 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.742185.933753.592072.64259
LEAShoots from the seedlings (10 cm shoot stage)2.752134.431083.846331.93347
INF1Young developing inflorescences (5mm)5.325815.661654.476252.60287
INF2Developing inflorescences (1-1.5 cm)5.418635.9175.612544.01174
ROORoots from the seedlings (10 cm shoot stage)2.286735.501164.906483.2896
NODDeveloping tillers at six leaf stage, 3rd internode3.917842.207961.534694.90079
CAR5Developing grain, bracts removed (5 DPA)7.29096.326899.043894.23938
CAR15Developing grain, bracts removed (15 DPA)2.541012.524482.282853.37352



CDS Structure of MLOC_72527






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72527.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72527.1NoneAvailableAvailablecontig_61828 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g07450.3 +1 4e-19 89 47/90 (52%) 13112.m00779 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT2G37160.1 +1 4e-18 85 46/91 (51%) Transducin/WD40 repeat-like superfamily protein | chr2:15609047-15612529 FORWARD LENGTH=544