MLOC_72421 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.019045.506374.717574.18391
LEAShoots from the seedlings (10 cm shoot stage)5.85473.301954.159813.27209
INF1Young developing inflorescences (5mm)9.595269.903027.391516.75851
INF2Developing inflorescences (1-1.5 cm)9.916839.6040311.06189.64978
ROORoots from the seedlings (10 cm shoot stage)5.35644.72674.822264.53138
NODDeveloping tillers at six leaf stage, 3rd internode3.380783.347334.282288.9018
CAR5Developing grain, bracts removed (5 DPA)7.673226.645927.566336.00778
CAR15Developing grain, bracts removed (15 DPA)1.848451.993912.008974.04304



CDS Structure of MLOC_72421






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72421.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72421.1CUST_9720_PI427708083AvailableAvailablecontig_61606 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g31340.1 +2 7e-110 351 220/513 (43%) 13112.m03190 protein OsFBD15 - F-box and FBD domain containing protein, expressed
TAIR PP10 AT1G13570.1 +2 3e-13 73 95/416 (23%) F-box/RNI-like superfamily protein | chr1:4642528-4643930 REVERSE LENGTH=416