MLOC_72359 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9809471.022470.9622961.03577
LEAShoots from the seedlings (10 cm shoot stage)0.77423600.317830.540949
INF1Young developing inflorescences (5mm)0.426350.8399710.2596530.427215
INF2Developing inflorescences (1-1.5 cm)0.1706920.7793410.9176450.62211
ROORoots from the seedlings (10 cm shoot stage)0.4093511.144601.64547
NODDeveloping tillers at six leaf stage, 3rd internode0.5747030.1810640.06135550.57196
CAR5Developing grain, bracts removed (5 DPA)0.2119070.3833450.9266470.502986
CAR15Developing grain, bracts removed (15 DPA)0.217364000.796065



CDS Structure of MLOC_72359






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72359.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72359.1CUST_9710_PI427708083AvailableAvailablecontig_61499 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g44170.1 +3 1e-25 92 46/74 (62%) 13107.m04646 protein pentatricopeptide repeat domain containing protein, putative
TAIR PP10 AT1G06140.1 +3 8e-14 68 32/87 (37%) Pentatricopeptide repeat (PPR) superfamily protein | chr1:1864796-1866472 FORWARD LENGTH=558