MLOC_72338 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2214.521571.781470.21870.8
LEAShoots from the seedlings (10 cm shoot stage)688.588273.621297.402379.597
INF1Young developing inflorescences (5mm)2190.542272.192219.732083.1
INF2Developing inflorescences (1-1.5 cm)1603.931234.551338.811634.77
ROORoots from the seedlings (10 cm shoot stage)1033.351202.981496.851568.63
NODDeveloping tillers at six leaf stage, 3rd internode110.67553.4476105.903235.609
CAR5Developing grain, bracts removed (5 DPA)550.426586.303549.559604.751
CAR15Developing grain, bracts removed (15 DPA)254.572226.624236.122601.062



CDS Structure of MLOC_72338






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72338.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252274.1NoneNoneNoneNone
MLOC_72338.1CUST_6144_PI427708080AvailableAvailablecontig_61453 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g09510.1 -1 5e-28 105 81/114 (71%) 13101.m01011 protein 60S acidic ribosomal protein, putative, expressed
TAIR PP10 AT2G27710.4 -1 1e-17 77 37/61 (61%) 60S acidic ribosomal protein family | chr2:11816929-11817670 FORWARD LENGTH=98