MLOC_72321 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.586375.301264.442355.17787
LEAShoots from the seedlings (10 cm shoot stage)2.887025.648843.672753.12862
INF1Young developing inflorescences (5mm)8.308889.2317710.17497.04576
INF2Developing inflorescences (1-1.5 cm)13.123814.484514.979214.1886
ROORoots from the seedlings (10 cm shoot stage)6.814676.483486.495567.17094
NODDeveloping tillers at six leaf stage, 3rd internode2.830762.480943.255047.59777
CAR5Developing grain, bracts removed (5 DPA)12.566812.503913.72211.4206
CAR15Developing grain, bracts removed (15 DPA)3.743744.146354.601648.48297



CDS Structure of MLOC_72321






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72321.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250101.1NoneNoneNoneNone
MLOC_72321.2CUST_6143_PI427708080AvailableAvailablecontig_61434 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42630.2 -2 3e-145 425 210/274 (77%) 13101.m04382 protein C-5 cytosine-specific DNA methylase, putative, expressed
TAIR PP10 AT5G25480.1 -2 3e-160 467 242/375 (65%) | Symbols: DNMT2, AtDNMT2 | DNA methyltransferase-2 | chr5:8870069-8872199 REVERSE LENGTH=383