- Predicted Gene MLOC_72290
MLOC_72290 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_72290_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_72290_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.929127 | 4.31712 | 3.45527 | 3.1984 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 364.041 | 351.138 | 385.326 | 297.621 |
INF1 | Young developing inflorescences (5mm) | 0.570659 | 0.100645 | 0.421594 | 0.30798 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.778026 | 0.302539 | 0.505293 | 0.567769 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.870623 | 2.10025 | 7.79777 | 2.86642 |
NOD | Developing tillers at six leaf stage, 3rd internode | 553.981 | 312.357 | 402.413 | 975.094 |
CAR5 | Developing grain, bracts removed (5 DPA) | 13.0941 | 11.4311 | 10.6314 | 11.5386 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.772083 | 0.377207 | 0.497883 | 1.34559 |
CDS Structure of MLOC_72290
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_72290.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g52240.1 |
+1 |
8e-168 |
479 |
231/253 (91%) |
13101.m05463 protein chlorophyll A-B binding protein, putative, expressed |
TAIR PP10 |
AT2G34420.1 |
+1 |
5e-156 |
448 |
223/253 (88%) |
| Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265 |