MLOC_72290 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9291274.317123.455273.1984
LEAShoots from the seedlings (10 cm shoot stage)364.041351.138385.326297.621
INF1Young developing inflorescences (5mm)0.5706590.1006450.4215940.30798
INF2Developing inflorescences (1-1.5 cm)0.7780260.3025390.5052930.567769
ROORoots from the seedlings (10 cm shoot stage)0.8706232.100257.797772.86642
NODDeveloping tillers at six leaf stage, 3rd internode553.981312.357402.413975.094
CAR5Developing grain, bracts removed (5 DPA)13.094111.431110.631411.5386
CAR15Developing grain, bracts removed (15 DPA)0.7720830.3772070.4978831.34559



CDS Structure of MLOC_72290






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72290.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249435.1NoneNoneNoneNone
MLOC_72290.1CUST_6138_PI427708080AvailableAvailablecontig_61378 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52240.1 +1 8e-168 479 231/253 (91%) 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 +1 5e-156 448 223/253 (88%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265