MLOC_72277 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.06740.6861891.586240.943033
LEAShoots from the seedlings (10 cm shoot stage)4.003463.872623.916343.02612
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)000.05235110.0392931
ROORoots from the seedlings (10 cm shoot stage)3.076612.973154.817833.25847
NODDeveloping tillers at six leaf stage, 3rd internode4.103264.799761.366099.96427
CAR5Developing grain, bracts removed (5 DPA)16.397820.99411.050715.5453
CAR15Developing grain, bracts removed (15 DPA)10.655910.80446.2811923.6735



CDS Structure of MLOC_72277






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72277.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359332NoneNoneNoneNone
MLOC_72277.1CUST_461_PI427708083AvailableAvailablecontig_61360 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g10530.1 +3 4e-32 119 69/100 (69%) 13106.m01139 protein expressed protein
TAIR PP10 AT2G31945.1 +3 2e-17 78 45/73 (62%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05575.1); Has 61 Blast hits to 61 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13581691-13581978 FORWARD LENGTH=95