MLOC_72188 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.164541.343071.250771.70678
LEAShoots from the seedlings (10 cm shoot stage)4.808160.2600731.118731.74534
INF1Young developing inflorescences (5mm)4.852735.874815.01515.17347
INF2Developing inflorescences (1-1.5 cm)3.340024.325143.159374.83765
ROORoots from the seedlings (10 cm shoot stage)1.145981.769852.561322.49556
NODDeveloping tillers at six leaf stage, 3rd internode0.2243530.7987590.6194312.3125
CAR5Developing grain, bracts removed (5 DPA)1.133061.480591.539461.7106
CAR15Developing grain, bracts removed (15 DPA)0.1979660.2609690.1807980.651808



CDS Structure of MLOC_72188






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72188.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72188.2CUST_15772_PI427708080AvailableAvailablecontig_61215 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46340.1 -1 2e-154 454 248/304 (82%) 13101.m04760 protein chloroplast unusual positioning protein, putative, expressed
TAIR PP10 AT4G18570.1 -1 2e-115 353 193/292 (66%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10231439-10234534 FORWARD LENGTH=642