MLOC_72178 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.996495.829415.133596.19321
LEAShoots from the seedlings (10 cm shoot stage)6.423193.581283.25224.22457
INF1Young developing inflorescences (5mm)21.939317.969317.396719.0784
INF2Developing inflorescences (1-1.5 cm)66.652265.013562.921186.9637
ROORoots from the seedlings (10 cm shoot stage)1.314223.901712.861125.55931
NODDeveloping tillers at six leaf stage, 3rd internode5.99098.5752411.581637.0722
CAR5Developing grain, bracts removed (5 DPA)34.472134.276633.846542.1919
CAR15Developing grain, bracts removed (15 DPA)8.23148.314127.5867722.9095



CDS Structure of MLOC_72178






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72178.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72178.1CUST_9699_PI427708083AvailableAvailablecontig_61193 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g44230.2 -3 7e-129 387 185/298 (62%) 13101.m04586 protein transcription factor X1, putative, expressed
TAIR PP10 AT3G48670.2 -3 4e-59 205 118/323 (37%) | Symbols: IDN2, RDM12 | XH/XS domain-containing protein | chr3:18031240-18033615 FORWARD LENGTH=647