MLOC_72172 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5744420.494470.2727680.575814
LEAShoots from the seedlings (10 cm shoot stage)0.16015400.06083330.103553
INF1Young developing inflorescences (5mm)1.023191.40971.262621.31382
INF2Developing inflorescences (1-1.5 cm)0.829940.7279020.8305641.06097
ROORoots from the seedlings (10 cm shoot stage)0.3764280.1524490.2696110.286331
NODDeveloping tillers at six leaf stage, 3rd internode0.04594090.1170050.09852660.393209
CAR5Developing grain, bracts removed (5 DPA)0.9416070.9458590.8670611.14814
CAR15Developing grain, bracts removed (15 DPA)0.6100190.1677630.4335421.09041



CDS Structure of MLOC_72172






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72172.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72172.1CUST_15771_PI427708080AvailableAvailablecontig_6118 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g17830.1 -1 2e-135 391 188/216 (87%) 13106.m01956 protein oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
TAIR PP10 AT2G22260.1 -1 7e-97 294 140/215 (65%) oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr2:9461342-9463053 FORWARD LENGTH=314