MLOC_72170 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1596.631412.931442.821537.79
LEAShoots from the seedlings (10 cm shoot stage)621.271438.11447.584445.975
INF1Young developing inflorescences (5mm)615.589610.817525.138522.943
INF2Developing inflorescences (1-1.5 cm)292.741365.738338.933387.514
ROORoots from the seedlings (10 cm shoot stage)1395.781606.091448.681996.6
NODDeveloping tillers at six leaf stage, 3rd internode852.111565.335324.8081962.11
CAR5Developing grain, bracts removed (5 DPA)1065.56962.322895.6161012.84
CAR15Developing grain, bracts removed (15 DPA)1061.341100.95815.4752433.83



CDS Structure of MLOC_72170






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72170.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251456.1NoneNoneNoneNone
MLOC_72170.1CUST_6126_PI427708080AvailableAvailablecontig_61179 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g40950.1 +1 0.0 597 313/337 (93%) 13104.m04007 protein glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT3G04120.1 +1 0.0 551 288/330 (87%) | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-phosphate dehydrogenase C subunit 1 | chr3:1081077-1083131 FORWARD LENGTH=338