MLOC_72162 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.977422.073721.205220.7392
LEAShoots from the seedlings (10 cm shoot stage)36.90110.949811.164416.8687
INF1Young developing inflorescences (5mm)55.865145.468840.541541.0239
INF2Developing inflorescences (1-1.5 cm)51.833255.641549.013857.7491
ROORoots from the seedlings (10 cm shoot stage)19.30917.23214.205120.1533
NODDeveloping tillers at six leaf stage, 3rd internode11.576610.040511.17631.831
CAR5Developing grain, bracts removed (5 DPA)67.791764.656.863860.6647
CAR15Developing grain, bracts removed (15 DPA)11.91447.478569.7447922.9842



CDS Structure of MLOC_72162






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72162.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359977NoneNoneNoneNone
MLOC_72162.1CUST_6125_PI427708080AvailableAvailablecontig_61162 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g50810.1 +1 0.0 1337 726/928 (78%) 13103.m05526 protein receptor protein kinase TMK1 precursor, putative, expressed
TAIR PP10 AT1G66150.1 +1 0.0 984 556/929 (60%) | Symbols: TMK1 | transmembrane kinase 1 | chr1:24631503-24634415 FORWARD LENGTH=942