MLOC_72037 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.210522.618213.527012.1762
LEAShoots from the seedlings (10 cm shoot stage)2.574941.936352.145711.57342
INF1Young developing inflorescences (5mm)3.910833.511944.038052.714
INF2Developing inflorescences (1-1.5 cm)4.489044.700894.406274.13958
ROORoots from the seedlings (10 cm shoot stage)2.544842.297242.984682.19795
NODDeveloping tillers at six leaf stage, 3rd internode3.310813.044694.465097.89797
CAR5Developing grain, bracts removed (5 DPA)2.960193.017092.963062.33076
CAR15Developing grain, bracts removed (15 DPA)1.189671.078041.08762.20712



CDS Structure of MLOC_72037






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72037.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72037.1CUST_13127_PI427708083AvailableAvailablecontig_60936 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g04300.1 -2 4e-38 147 107/163 (66%) 13106.m00383 protein tRNA 2-phosphotransferase 1, putative, expressed
TAIR PP10 AT5G23600.1 -2 5e-31 124 58/79 (73%) RNA 2-phosphotransferase, Tpt1 / KptA family | chr5:7955994-7956632 FORWARD LENGTH=212