MLOC_72002 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2715010.2405140.1014180.200139
LEAShoots from the seedlings (10 cm shoot stage)0.5340070.2222230.4457560.313094
INF1Young developing inflorescences (5mm)000.03584880.0310093
INF2Developing inflorescences (1-1.5 cm)0.2347820.1427740.2005440.222026
ROORoots from the seedlings (10 cm shoot stage)0.26423600.09930250.0776516
NODDeveloping tillers at six leaf stage, 3rd internode0.9378592.685362.204426.73251
CAR5Developing grain, bracts removed (5 DPA)1.337241.794991.255121.53888
CAR15Developing grain, bracts removed (15 DPA)0.09500880.085368900.26381



CDS Structure of MLOC_72002






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72002.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_72002.1CUST_15741_PI427708080AvailableAvailablecontig_60861 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g36900.1 -3 2e-117 352 212/333 (64%) 13105.m03827 protein dof zinc finger domain containing protein, putative
TAIR PP10 AT3G52440.1 -3 1e-33 128 53/62 (85%) Dof-type zinc finger DNA-binding family protein | chr3:19435447-19436190 FORWARD LENGTH=247