MLOC_72001 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3929270.622050.2788410.467147
LEAShoots from the seedlings (10 cm shoot stage)1.877124.62988.254023.88893
INF1Young developing inflorescences (5mm)1.125480.9082031.028750.822151
INF2Developing inflorescences (1-1.5 cm)0.5527330.5748860.5646040.594733
ROORoots from the seedlings (10 cm shoot stage)1.27192.01871.749612.09143
NODDeveloping tillers at six leaf stage, 3rd internode0.6485810.9770010.9186462.86912
CAR5Developing grain, bracts removed (5 DPA)0.4665710.760360.8361090.635367
CAR15Developing grain, bracts removed (15 DPA)0.2537720.2765930.1477330.557696



CDS Structure of MLOC_72001






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_72001.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362681NoneNoneNoneNone
MLOC_72001.4CUST_18416_PI427708080AvailableAvailablecontig_60742 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g34980.1 +2 0.0 547 298/603 (49%) 13107.m03574 protein TKL_IRAK_DUF26-lh.9 - DUF26 kinases have homology to DUF26 containing loci
TAIR PP10 AT4G23280.1 +2 2e-126 400 237/597 (40%) | Symbols: CRK20 | cysteine-rich RLK (RECEPTOR-like protein kinase) 20 | chr4:12174740-12177471 FORWARD LENGTH=656