MLOC_71988 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.475079.032378.741036.44731
LEAShoots from the seedlings (10 cm shoot stage)9.9172510.434911.90648.05723
INF1Young developing inflorescences (5mm)13.266915.539314.208210.876
INF2Developing inflorescences (1-1.5 cm)22.881622.299817.99321.0273
ROORoots from the seedlings (10 cm shoot stage)8.03269.522477.071139.15597
NODDeveloping tillers at six leaf stage, 3rd internode6.7092210.13119.2116427.6497
CAR5Developing grain, bracts removed (5 DPA)13.866613.594712.867111.5086
CAR15Developing grain, bracts removed (15 DPA)13.323412.293510.79525.4638



CDS Structure of MLOC_71988






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71988.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71988.2CUST_9665_PI427708083AvailableAvailablecontig_60830 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15020.2 +2 2e-82 276 134/185 (72%) 13101.m01663 protein lissencephaly type-1-like homology motif, putative, expressed
TAIR PP10 AT5G27030.1 +2 4e-59 210 99/166 (60%) | Symbols: TPR3 | TOPLESS-related 3 | chr5:9508913-9515263 REVERSE LENGTH=1108