MLOC_7198 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07917940.21586500.207683
LEAShoots from the seedlings (10 cm shoot stage)239.595120.652149.271135.482
INF1Young developing inflorescences (5mm)00.066519700.0595502
INF2Developing inflorescences (1-1.5 cm)0.0564466000.0693016
ROORoots from the seedlings (10 cm shoot stage)000.8459110.382408
NODDeveloping tillers at six leaf stage, 3rd internode46.315512.456728.265344.935
CAR5Developing grain, bracts removed (5 DPA)0.4845120.7098330.5755730.558289
CAR15Developing grain, bracts removed (15 DPA)0.3254560.07141070.1880770.494023



CDS Structure of MLOC_7198






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_7198.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_7198.1CUST_9663_PI427708083AvailableAvailablecontig_138781 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52240.1 +1 5e-119 347 167/186 (90%) 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 +1 1e-107 317 159/186 (85%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265