- Predicted Gene MLOC_71954
MLOC_71954 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 9.77766 | 16.9878 | 15.9559 | 17.5481 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 10.0073 | 5.06989 | 3.27003 | 5.18098 |
INF1 | Young developing inflorescences (5mm) | 46.2717 | 45.7423 | 40.3174 | 44.2903 |
INF2 | Developing inflorescences (1-1.5 cm) | 41.9296 | 34.2316 | 38.2658 | 48.3651 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.00459 | 10.9164 | 18.4115 | 14.7826 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.5096 | 0.732049 | 2.55184 | 3.48903 |
CAR5 | Developing grain, bracts removed (5 DPA) | 18.6683 | 26.1544 | 20.3434 | 26.2555 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.99498 | 3.34174 | 2.6587 | 9.44277 |
CDS Structure of MLOC_71954
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_71954.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g62040.3 |
+2 |
3e-38 |
132 |
81/90 (90%) |
13101.m06632 protein ruvB-like, putative, expressed |
TAIR PP10 |
AT5G22330.1 |
+2 |
2e-32 |
120 |
72/90 (80%) |
| Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458 |