MLOC_71954 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.7776616.987815.955917.5481
LEAShoots from the seedlings (10 cm shoot stage)10.00735.069893.270035.18098
INF1Young developing inflorescences (5mm)46.271745.742340.317444.2903
INF2Developing inflorescences (1-1.5 cm)41.929634.231638.265848.3651
ROORoots from the seedlings (10 cm shoot stage)6.0045910.916418.411514.7826
NODDeveloping tillers at six leaf stage, 3rd internode1.50960.7320492.551843.48903
CAR5Developing grain, bracts removed (5 DPA)18.668326.154420.343426.2555
CAR15Developing grain, bracts removed (15 DPA)3.994983.341742.65879.44277



CDS Structure of MLOC_71954






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71954.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71954.2CUST_9658_PI427708083AvailableAvailablecontig_60769 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62040.3 +2 3e-38 132 81/90 (90%) 13101.m06632 protein ruvB-like, putative, expressed
TAIR PP10 AT5G22330.1 +2 2e-32 120 72/90 (80%) | Symbols: ATTIP49A, RIN1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:7391026-7394071 REVERSE LENGTH=458