MLOC_71953 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0.18011000.192749
INF1Young developing inflorescences (5mm)000.1199570.0586358
INF2Developing inflorescences (1-1.5 cm)0.4979240.075409900.343322
ROORoots from the seedlings (10 cm shoot stage)0.19361200.3345990.155224
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)91.658492.788898.182669.9688
CAR15Developing grain, bracts removed (15 DPA)470.774386.673402.924797.725



CDS Structure of MLOC_71953






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71953.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71953.1CUST_9657_PI427708083AvailableAvailablecontig_60768 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g32660.2 -1 3e-140 412 190/210 (90%) 13102.m03539 protein 1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
TAIR PP10 AT5G03650.1 -1 5e-126 380 170/209 (81%) | Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805