MLOC_71943 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.525333.429512.549332.86618
LEAShoots from the seedlings (10 cm shoot stage)2.030572.227212.317621.79713
INF1Young developing inflorescences (5mm)4.559445.086824.144214.21958
INF2Developing inflorescences (1-1.5 cm)4.772165.256545.164175.79644
ROORoots from the seedlings (10 cm shoot stage)2.028621.798991.738752.12157
NODDeveloping tillers at six leaf stage, 3rd internode1.558571.827491.616494.60201
CAR5Developing grain, bracts removed (5 DPA)2.582722.403581.813742.34332
CAR15Developing grain, bracts removed (15 DPA)0.5427270.6867890.5597811.56629



CDS Structure of MLOC_71943






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_71943.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_71943.1CUST_9655_PI427708083AvailableAvailablecontig_60751 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g27360.2 -1 2e-99 318 165/246 (67%) 13102.m02973 protein aspartic proteinase-like protein 2 precursor, putative, expressed
TAIR PP10 AT1G05840.1 -1 2e-75 254 139/245 (57%) Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485